| Regular Season | Saturday, 10/04/1999 | Inglewood Falcons - Fremantle City | 2:3 | ||||||
| Regular Season | Saturday, 17/04/1999 | Fremantle City - Ashfield/Bunbury | 2:1 | ||||||
| Regular Season | Saturday, 24/04/1999 | Western Knights - Fremantle City | 2:3 | ||||||
| Regular Season | Saturday, 01/05/1999 | Fremantle City - ECU Joondalup | 1:3 | ||||||
| Regular Season | Saturday, 08/05/1999 | Bayswater City Panthers - Fremantle City | 1:4 | ||||||
| Regular Season | Saturday, 15/05/1999 | Fremantle City - Stirling Lions | 2:3 | ||||||
| Regular Season | Saturday, 22/05/1999 | Floreat Athena - Fremantle City | 3:3 | ||||||
| Regular Season | Saturday, 29/05/1999 | Fremantle City - Sorrento | 2:1 | ||||||
| Regular Season | Saturday, 05/06/1999 | Kingsway Olympic - Fremantle City | 0:2 | ||||||
| Regular Season | Saturday, 12/06/1999 | Fremantle City - Perth SC | 2:0 | ||||||
| Regular Season | Saturday, 19/06/1999 | Fremantle City - Cockburn City | 2:2 | ||||||
| Regular Season | Saturday, 26/06/1999 | Fremantle City - Inglewood Falcons | 1:0 | ||||||
| Regular Season | Saturday, 10/07/1999 | Ashfield/Bunbury - Fremantle City | 0:11 | ||||||
| Regular Season | Saturday, 17/07/1999 | Fremantle City - Western Knights | 2:1 | ||||||
| Regular Season | Saturday, 24/07/1999 | ECU Joondalup - Fremantle City | 1:1 | ||||||
| Regular Season | Saturday, 31/07/1999 | Fremantle City - Bayswater City Panthers | 1:0 | ||||||
| Regular Season | Saturday, 07/08/1999 | Stirling Lions - Fremantle City | 0:2 | ||||||
| Regular Season | Saturday, 14/08/1999 | Fremantle City - Floreat Athena | 0:2 | ||||||
| Regular Season | Saturday, 21/08/1999 | Sorrento - Fremantle City | 2:1 | ||||||
| Regular Season | Saturday, 28/08/1999 | Fremantle City - Kingsway Olympic | 4:0 | ||||||
| Regular Season | Saturday, 04/09/1999 | Perth SC - Fremantle City | 2:0 | ||||||
| Regular Season | Saturday, 11/09/1999 | Cockburn City - Fremantle City | 1:1 | ||||||
| 2 | Champion of Champions Finals Series | Saturday, 02/10/1999 | Fremantle City - Western Knights | 2:4 | (0:0, 1:1, 1:1) Pens. |